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Platform · BioFlow

BioFlow

Hosted beta console

Deterministic workflow OS for life-science pipelines

A deterministic workflow OS for life-science pipelines. BioFlow produces content-addressed artifacts and cryptographic audit trails so teams can model, verify, and share results with confidence.

Built for bioinformatics and platform teams who need reproducible runs, audit-grade evidence, and safe hand-offs between local CLI and hosted workspaces.

Create workspaceOpen onboarding
API reference deep links
Use these operation anchors to inspect request/response contracts before issuing web-console actions.
POST /api/bioflow/proxyPOST /api/bioflow/telemetryGET /api/bioflow/telemetry/scoreboardPOST /api/bioflow/telemetry/session

BioFlow runs locally or inside a hosted boundary with the same deterministic guarantees.

bioflow run manifest
json
{
  "run_id": "run_2026_04_16_ab12",
  "inputs_sha256": "sha256:7f8a...",
  "container_digest": "sha256:3c4d...",
  "artifacts": [
    { "path": "output.vcf", "sha256": "sha256:9e0f..." },
    { "path": "metrics.json", "sha256": "sha256:2b3c..." }
  ],
  "audit_chain": [
    { "seq": 1, "event": "ingest", "digest": "sha256:..." },
    { "seq": 2, "event": "run", "digest": "sha256:..." },
    { "seq": 3, "event": "verify", "digest": "sha256:..." }
  ]
}
Local CLIHosted workspaceContent-addressedAudit chain
Evidence
Every run produces cryptographic receipts, canonical manifests, and replayable scripts.
VerifiedExamine proof bundle
Artifact addressing
Content-addressed
SHA-256
Every artifact is addressed by its cryptographic digest.
Audit model
Tamper-evident logs
Chained
Run metadata is linked so history cannot be silently rewritten.
Deployment
CLI and web console
Local + hosted
Local-first with optional multi-tenant hosted boundary.
Verification
Deterministic reruns
Built-in
Canonical JSON hashing for manifests and replayable run scripts.

Built for teams that require proof

BioFlow replaces “trust the run” with “verify the run.” Every artifact is hashed, every manifest is canonical, and every audit log is chained.

Deterministic bundles
  • Turn messy inputs into content-addressed, verifiable artifact bundles.
  • Canonical JSON hashing ensures manifests are stable across runs and environments.
Cryptographic audit trails
  • Every run produces an audit chain linking inputs, containers, parameters, and outputs.
  • Third parties can verify integrity without accessing your raw data.
Team workspaces
  • Share runs across a team without losing verifiability or creating shadow copies.
  • Hosted boundary enforces tenant isolation, CORS allowlists, and rate limits.
Start with a workspace
Sign up for a hosted BioFlow workspace, run the onboarding console, and start producing deterministic artifacts.
Create workspace Open onboarding

Part of the Omnis platform

BioFlow runs on the same deterministic rail as BioCost and BioAudit. Cost visibility and audit readiness are first-class artifacts.

BioCost

Nextflow cost analyzer with deterministic reports and replayable configuration patches.

View BioCost
BioAudit

Experimental tamper-evident evidence ledger for regulated environments.

View BioAudit

Use cases

Built for teams where reproducibility, auditability, and safe collaboration are non-negotiable.

Regulated pipelines

Ship audit trails and deterministic bundles alongside every pipeline run for compliance review.

Explore Regulated pipelines →
Multi-team platforms

Embed BioFlow into internal platforms so teams can share workflows without losing traceability.

Explore Multi-team platforms →
Clinical production lines

Run life-science pipelines with content-addressed artifacts and regression gates.

Explore Clinical production lines →

Developer corner

BioFlow exposes both a local CLI and a web-operable API. Start with signup and onboarding, then operate runs, settings, and telemetry from the console or your own client.

BioFlow signupOnboarding consoleTelemetry dashboardDocs
Hosted API
POST /api/bioflow/proxy
{
  "action": "submit_run",
  "inputs_sha256": "sha256:7f8a...",
  "pipeline": "wgs30"
}
Returns a run ID and initial audit chain entry. Poll telemetry for status and verification.
From CLI-first to web-operable surfaces
Start with self-serve signup, then use onboarding, run registry, workspace settings, and telemetry pages to operate the hosted BioFlow boundary without dropping to raw API calls.
Create workspaceOpen onboarding consoleOpen run registryOpen workspace settingsOpen telemetry dashboardRead verification model
BioFlow | Deterministic workflow OS