Docs · OGN platform
GPU-native genomics operating system
From raw reads to GIAB-validated variant calls in a continuous GPU pipeline. This is the control surface for the engine: CLI, pipelines, benchmarks, and deployment runbooks.
CUDA 12+Hopper · AmpereGIAB-validated flowsSchemas stable
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Documentation overview
Documentation
Public documentation for Omnis Genomics tools. If you want to run something immediately, use the start path below.
Start Here (Fast Path)
- BioCost quickstart - fastest path to deterministic cost and runtime analysis for Nextflow artifacts.
- OGN CLI quickstart - run HG002 and your own samples from the command line.
- Pilot quickstart (Docker Compose demo) - launch the local demo stack and export proof artifacts.
- Proof bundle demo - inspect the exact artifact shape buyers and reviewers verify.
If You Need BioCost Right Now
- Read: BioCost quickstart
- Copy-paste run path:
BashPowerShellPython API (coming)
ogn CLIcd ~/BioCost
python3 -m venv .venv
. .venv/bin/activate
python -m pip install -e '.[dev]'
./demo/run_demo.sh --checkCore Public Docs
- OGN Core Kit (open source) - public runner, Job Spec v1 contract, SDKs, and workflow adapters.
- GPU support matrix - supported GPUs and configurations.
- Platform architecture - system overview.
Docs are Markdown-backed and loaded into the
/docs registry for deterministic rendering and search.PatentChecker Self-Serve Docs
- PatentChecker self-serve onboarding - client preflight + one-shot run + offline verify.
- PatentChecker self-serve starter -
.envand compose starter kit. - PatentChecker security posture - supply chain + scan posture + verification model.
HelixMCP
- HelixMCP toolpack example (ABI v1) - out-of-tree template for writing a toolpack that conforms to the frozen ABI.
API Reference (OpenAPI)
- Spec:
openapi/ogn.public.swagger.json - Offline viewers:
docs/openapi/swagger.html,docs/openapi/redoc.html